Why is PyTorch 2x slower than Keras for an identical model and hyperparameters?
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Introduction
In the world of deep learning frameworks, PyTorch and Keras are two of the most popular choices among researchers and practitioners. They offer powerful tools to fashion neural networks, conduct experiments, and deploy models. Despite their similarities, it's not uncommon to observe differences in performance, particularly in terms of speed. There are instances where PyTorch can be noticeably slower than Keras for identical models with the same hyperparameters. This article delves into some technical explanations for this disparity.
Differences in Computational Backend
One of the prominent reasons for the speed difference lies in the computational backend. Keras, until recently, has heavily relied on TensorFlow as its backend, which has mature and robust optimizations. PyTorch, on the other hand, has its dynamic computation graph mechanism and different optimization strategies.
Static vs Dynamic Computation Graph
Keras with TensorFlow utilizes a static computation graph, where the computation is compiled before execution. This feature allows the optimization to take place at compile time, potentially enhancing performance through various techniques such as operation fusion.
PyTorch, however, employs a dynamic computation graph known as "Define-by-Run." This means the graph is built on-the-fly at each iteration. While this provides flexibility and ease of debugging, it can result in additional overhead since the graph is constructed during every forward pass, which might hinder optimization and lead to slower execution.
Optimizations at the Framework Level
Operation Fusion
As mentioned, Keras (through TensorFlow) can utilize operation fusion due to its static graph nature. This means multiple operations can be combined into a single kernel to reduce the computational overhead and improve efficiency. PyTorch's dynamic graphs make operation fusion more challenging, and although there has been significant progress in optimizing this through technologies like TorchScript, it may still lag behind Keras and TensorFlow in this regard.
Just-In-Time (JIT) Compilation
Keras benefits from TensorFlow's XLA (Accelerated Linear Algebra) compiler, which can significantly boost performance through a Just-In-Time (JIT) compilation that optimizes computations. PyTorch has its JIT compilation mechanism, introduced relatively later, which might not yet match the optimization level of XLA in all scenarios.
Data Loading and Input Pipelines
Efficient data loading is essential for utilizing GPUs effectively, and both frameworks have different approaches:
- Keras: Typically uses the `tf.data` API, which facilitates highly optimized data pipelines. Multiple enhancements, such as parallel data loading and prefetching, can seamlessly integrate due to TensorFlow's sophisticated execution engine.
- PyTorch: Offers `DataLoader` and `Dataset` classes with versatile capabilities but might require manual finetuning to achieve optimal performance. For instance, setting appropriate parameters for `num_workers` or `pin_memory` is crucial for performance gains.
Memory Management and GPU Utilization
The way memory is managed in both frameworks can influence the execution speed:
- Keras/TensorFlow: Often has aggressive memory allocation strategies that preemptively allocate and deallocate memory blocks to optimize GPU utilization.
- PyTorch: Provides more explicit control over memory management, which, while useful, might require manual interventions to achieve the same level of efficiency.
Example Analysis
Let's examine a simple model in both frameworks to illustrate the speed differences. Consider an identical convolutional neural network (CNN) architecture used in both PyTorch and Keras for image classification:

